Software and Databases
Reusable, quick installation, and open source
SOFTWARE
SOFTWARE
Most of our software packages can be installed via conda
Most of our software packages can be installed via conda
panEDTA pangenome EDTA for consistent and high-quality annotation of TEs (example: PopTEvo)
EDTA Extensive de-novo TE Annotator for structural and homology annotation of TEs
TEsorter an accurate and fast method to classify LTR retrotransposons in plant genomes
LAI the LTR Assembly Index for evaluation of repeat assembly in genomes
LTR_FINDER_parallel a parallel wrapper for LTR_FINDER
LTR_retriever a highly accurate and sensitive program for identification of LTR retrotransposons
ThetaPi estimate nucleotide diversity using tabular population SNPs
RESOURCES
RESOURCES